transcriptomics – Page 14

Functions of the Three Common Fungal Extracellular Membrane (CFEM) Domain-Containing Genes of Arthrobotrys flagrans in the Process of Nematode Trapping

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Arthrobotrys flagrans is a fungus that acts as a natural pest controller by trapping and killing parasitic nematodes that damage crops and livestock. Scientists studied three key genes in this fungus that contain CFEM protein domains and found they are critical for forming sticky traps and controlling how deadly the fungus is to nematodes. The research shows that when certain CFEM genes are removed, the fungus produces stickier traps and kills more nematodes, while removing other CFEM genes has the opposite effect, providing insights for developing better biocontrol products.

Iron acquisition in the mutualistic fungus Penicillium herquei: implications of mineral elements in insect-fungus symbiosis

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A fungus that lives with beetles has evolved special abilities to collect and store iron, which it shares with its insect partner. Researchers found that this mutualistic fungus produces much higher levels of iron than the plant leaves the beetles would normally eat. The fungus uses special proteins and iron-grabbing molecules to accumulate this essential nutrient, providing a nutritional advantage to the beetle and strengthening their partnership.

New insights into temperature-impacted mycovirus-fungus interactions regulated by a microRNA in Lentinula edodes

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When shiitake mushrooms are infected with a virus and exposed to heat stress, the virus replicates more aggressively, which makes the mushrooms more susceptible to heat damage and competitive fungi. Researchers discovered that a small regulatory RNA molecule called led-milR-21 plays a key role in this process by suppressing the mushroom’s heat defense mechanisms when the virus is present. This discovery is important because it shows how viruses can exploit heat stress to overcome fungal defenses, with implications for mushroom cultivation in a warming climate.

Comparative Multi-Omics Analysis and Antitumor Activity of Phylloporia crataegi and Phylloporia fontanesiae

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Researchers compared two types of medicinal fungi (Phylloporia crataegi and Phylloporia fontanesiae) to understand why one is better at fighting cancer. They used advanced techniques to examine the fungi’s chemicals, genes, and proteins, discovering that P. crataegi contains special compounds like trans-cinnamic acid that help kill cancer cells. This study provides important information for developing new cancer treatments from these fungi.

Uncovering the transcriptional landscape of Fomes fomentarius during fungal-based material production through gene co-expression network analysis

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Scientists studied how the mushroom Fomes fomentarius decomposes plant materials and grows as a biomaterial for making sustainable products. Using advanced gene analysis, they discovered which genes control the fungus’s ability to break down wood and form composites, and identified key genetic switches that could be used to improve material production. This research provides a blueprint for engineering better fungal-based alternatives to conventional construction and packaging materials.

Transcriptome Analysis Reveals Critical Genes Involved in the Response of Stropharia rugosoannulata to High Temperature and Drought Stress

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This study examined how a type of edible mushroom called Stropharia rugosoannulata responds to high heat and dry conditions by analyzing which genes become active. Researchers found that under stress, the mushroom activates specific genes that help it survive, particularly through a cellular communication pathway called MAPK. They identified 15 key genes that could be useful for breeding mushroom varieties that better withstand harsh growing conditions, which could improve mushroom farming efficiency.

Exploring the Mechanisms of Amino Acid and Bioactive Constituent Formation During Fruiting Body Development in Lyophyllum decastes by Metabolomic and Transcriptomic Analyses

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This study examined how Lyophyllum decastes mushrooms develop and build up their nutritious compounds. Researchers tracked amino acids and polysaccharides across four growth stages and identified which genes control their production. The mature mushrooms contained the highest levels of beneficial compounds, with amino acids reaching 45,107.39 μg/g and polysaccharides at 13.66 mg/g. These findings help explain why these mushrooms are nutritious and suggest ways to grow them better for maximum health benefits.

Application and Mechanism of Action of Carvacrol Against Aspergillus niger Causing Postharvest Rot of Garlic Scapes (Allium sativum L.)

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Garlic scapes, the tender flower stalks of garlic plants, often rot during storage due to fungal infections. Researchers discovered that carvacrol, a natural compound found in herbs like thyme and oregano, effectively kills the fungi responsible for this spoilage. By damaging the fungal cell walls, carvacrol can help preserve fresh garlic scapes longer without synthetic chemicals, making it a promising natural food preservative for grocery stores and consumers.

Volatile Metabolome and Transcriptomic Analysis of Kosakonia cowanii Ch1 During Competitive Interaction with Sclerotium rolfsii Reveals New Biocontrol Insights

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This research demonstrates how a beneficial bacterium called Kosakonia cowanii Ch1 can fight a harmful fungus that damages crops. The bacterium produces volatile chemicals that inhibit fungal growth and shows different gene activity depending on whether these chemicals are present. When the beneficial bacteria and fungus compete together with the volatiles present, the bacteria win by producing gas bubbles and effectively stopping the fungus. These findings suggest a natural alternative to chemical fungicides for protecting crops.

Volatile Metabolome and Transcriptomic Analysis of Kosakonia cowanii Ch1 During Competitive Interaction with Sclerotium rolfsii Reveals New Biocontrol Insights

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Researchers studied how a beneficial bacterium called K. cowanii fights against a harmful soil fungus (S. rolfsii) that damages crops like chili peppers. The bacterium produces special smelly compounds (VOCs) that kill the fungus. When these compounds are present, the bacterium activates specific genes that help it produce substances to protect itself and inhibit fungal growth. This research could help farmers use natural biocontrol instead of chemical fungicides.

Research Keyword: transcriptomics