Research Keyword: genome annotation

Complete genome sequence of Bacillus licheniformis KNU11, isolated from soil

Scientists sequenced the complete genetic code of a soil bacterium called Bacillus licheniformis strain KNU11. This bacterium produces powerful enzymes and can break down pollutants, making it useful for cleaning up environmental contamination and promoting plant growth. The genetic blueprint revealed over 4,000 genes that enable these beneficial capabilities.

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Analysis of Gene Regulatory Network and Transcription Factors in Different Tissues of the Stropharia rugosoannulata Fruiting Body

Researchers analyzed the gene activity patterns across different parts of wine cap mushrooms (Stropharia rugosoannulata) to understand how the fruiting body develops. By examining gene expression in six different tissue types, they identified which genes are active in each tissue and what biological processes they control. This foundational knowledge can help improve mushroom cultivation techniques and production efficiency.

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Genome assemblies for Pyricularia species and related genera isolated from diverse host plants

Scientists have sequenced the complete genetic blueprints of 35 fungal strains belonging to Pyricularia species and related genera, which cause devastating blast diseases in crops like rice and wheat. By analyzing genetic differences between strains that infect different grass species, researchers found that most Pyricularia oryzae strains show strong preferences for specific host plants. These new genome resources will help scientists understand how fungal pathogens evolve and adapt to new plant hosts, potentially improving disease management strategies.

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Morphogenesis, starvation, and light responses in a mushroom-forming fungus revealed by long-read sequencing and extensive expression profiling

Researchers created a detailed genetic instruction manual for a common mushroom species called Coprinopsis cinerea. Using advanced sequencing technology, they identified all the genes and precisely mapped where genes start and stop, what controls them, and how they respond to light and hunger. This improved genetic map reveals how mushrooms form fruiting bodies and survive changing environmental conditions, providing a valuable resource for understanding mushroom biology and improving mushroom cultivation.

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Complete mitochondrial genomic sequence of Auricularia delicata (Auriculariaceae), an edible Chinese mushroom

Scientists have sequenced the complete mitochondrial genome of Auricularia delicata, a popular edible jelly mushroom used in Chinese cuisine and traditional medicine. The genome is 189,696 base pairs long and contains 60 genes. This genetic information helps scientists understand how A. delicata is related to other mushroom species and provides a valuable resource for future research and cultivation of this important fungal species.

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Genome annotation of Aspergillus melleus strain CBS 546.65

Scientists have created a detailed functional map of the Aspergillus melleus fungal genome, identifying over 12,000 genes and 102 biosynthetic gene clusters. This fungus is valuable because it produces compounds with insecticidal, nematicidal, and antibiotic properties, as well as proteases used in health supplements. The annotation provides a roadmap for understanding how this fungus makes these useful compounds and could help optimize its industrial applications.

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Genome resource of Phlyctema vagabunda strain 19EL15, a pathogen of post-harvest bull’s eye rot of apple

Scientists sequenced the complete genetic blueprint of a fungus called Phlyctema vagabunda that causes serious damage to apples and pears after harvest, particularly creating brown spots called bull’s eye rot. The fungus is found across Europe and North America and costs farmers significant money in crop losses. This genetic information will help researchers better understand how the fungus works and develop better ways to prevent or manage the disease.

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Myco-Ed: Mycological curriculum for education and discovery

Myco-Ed is an educational program that teaches students about fungi while helping scientists create reference genomes for understudied fungal species. Students collect fungi from their local environments, identify them, and prepare samples for advanced genome sequencing through partnerships with major research institutions. This program solves two problems at once: training the next generation of fungal researchers and filling critical gaps in our knowledge of fungal genetics and diversity.

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Effect of Pseudomonas protegens EMM-1 Against Rhizopus oryzae in Interactions with Mexican Autochthonous Red Maize

Mexican red maize, an important traditional crop, is threatened by a fungus called Rhizopus oryzae that causes root damage and wilting. Researchers found that a beneficial bacterium, Pseudomonas protegens EMM-1, can effectively stop this fungal infection and help maize plants grow better. Tests showed the bacterium reduced fungal growth by over 80% and improved plant root development when grown together with the fungus.

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The HOG signal pathway contributes to survival strategies of the piezo-tolerant fungus Aspergillus sydowii DM1 in hadal sediments

Scientists discovered a special deep-sea fungus from the Mariana Trench (nearly 7 miles deep) and studied how it survives extreme pressure and harsh conditions. By examining its DNA and turning off a specific gene called hog1, they found this gene is crucial for the fungus to handle stress and produce energy. Understanding how this deep-sea fungus adapts could help us develop stronger microorganisms for various applications and better understand how life survives in Earth’s most extreme environments.

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