gene annotation – mycolab.ai

Complete mitochondrial genomic sequence of Auricularia delicata (Auriculariaceae), an edible Chinese mushroom

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Scientists have completely sequenced the mitochondrial DNA of Auricularia delicata, a popular edible jelly mushroom used as food and medicine in China and other Asian regions. The genome is 189,696 base pairs long and contains 60 genes. This genetic information helps researchers understand how this mushroom is related to other species and provides a reference for future studies on mushroom cultivation and properties.

Whole genome sequencing and annotations of Trametes sanguinea ZHSJ

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Scientists have completely mapped the genetic code of Trametes sanguinea, a medicinal mushroom used in traditional Chinese medicine. They identified over 10,000 genes and analyzed how this mushroom produces compounds that fight tumors, boost immunity, protect the heart, and fight viruses. This genetic map will help researchers understand how to produce these beneficial compounds and develop new medicines from this mushroom.

De novo Genome Assembly and Annotation of 12 Fungi Associated with Fruit Tree Decline Syndrome in ON, Canada

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Apple and stone fruit trees in Ontario have been dying at alarming rates since 2016. Researchers sequenced and analyzed the genetic code of 12 different fungi suspected of causing this decline. This study provides the first complete genetic blueprints for several fungal species, helping farmers and scientists better understand what causes the disease and develop ways to prevent it.

Draft whole genome sequence of Alternaria alternata strain P02PL2, an endophytic fungal species isolated from Sclerocarya birrea

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Scientists sequenced the complete genetic blueprint of a beneficial fungus called Alternaria alternata that lives inside African marula tree leaves. This fungus produces many different bioactive compounds with potential medical applications. The genetic information is now publicly available for researchers to study how this fungus makes these useful compounds and develop new treatments.

The mitochondrial genome of a wild edible mushroom, Russula rosea

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Scientists sequenced the complete genetic instructions contained in the energy centers (mitochondria) of Russula rosea, a wild edible mushroom known for its antioxidant and anti-tumor properties. The mushroom’s mitochondrial genome contains 57 genes and is about 54,177 DNA base pairs long. By comparing this genetic information with other fungi, researchers found that Russula rosea is closely related to another mushroom species called Russula lepida. This discovery helps scientists better understand how edible mushrooms are related to each other evolutionarily.

Whole-genome sequencing of global forest pathogen Diplodia sapinea causing pine shoot blight

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This study presents a detailed genetic map of Diplodia sapinea, a fungus that causes serious disease in pine trees worldwide. Researchers sequenced the complete genome of a strain from China and compared it with related fungi to better understand how the pathogen causes disease. The high-quality genetic information provides important tools for scientists to develop better ways to prevent and control pine shoot blight, protecting valuable forests and timber resources.

Whole-genome sequencing of global forest pathogen Diplodia sapinea causing pine shoot blight

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Scientists have sequenced the complete genome of Diplodia sapinea, a fungus that causes serious disease in pine trees worldwide. This fungus normally lives harmlessly inside healthy pine trees but becomes dangerous during stressful conditions like droughts or storms. The new genome information will help scientists understand how this pathogen works and develop better ways to prevent and control the disease in forests.

Genome Sequencing of Hericium coralloides by a Combination of PacBio RS II and Next-Generation Sequencing Platforms

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Scientists successfully sequenced the complete genome of Hericium coralloides, a medicinal mushroom used in traditional Chinese medicine for treating heart disease, cancer, and stomach problems. Using advanced sequencing technology combining long-read and short-read methods, they assembled the 55 million base pair genome containing over 11,700 genes. This genetic blueprint reveals the mushroom contains genes for producing beneficial enzymes and compounds with therapeutic potential. This milestone opens the door for future research to develop new medicines based on this mushroom’s natural bioactive properties.

Complete mitochondrial genome of the fungal pathogen Fusarium oxysporum f. sp. palmarum responsible for fusarium wilt of palms

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Scientists have decoded the complete genetic instruction manual for a fungus that causes a deadly disease in palm trees. The fungus, Fusarium oxysporum f. sp. palmarum, kills palm trees by causing one-sided leaf death that spreads upward through the canopy. By sequencing the fungus’s mitochondrial genome—the energy-producing part of its cells—researchers have created a tool that can help quickly and accurately identify this pathogen in infected plants. This discovery will help nurseries and gardeners detect and prevent the spread of this destructive disease.

A high-quality genome assembly of Lactarius hatsudake strain JH5

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Scientists have completed a detailed genetic blueprint of the red milk mushroom (Lactarius hatsudake), an edible and medicinal fungus that grows in pine forests. This mushroom is nutritious and has been shown to help with diabetes, boost immunity, and fight harmful bacteria. The new genetic map is much more complete and detailed than previous versions, which will help farmers grow these valuable mushrooms more reliably and sustainably, and could lead to developing better varieties.

Research Keyword: gene annotation