DNA extraction – mycolab.ai

Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi

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Scientists developed a practical method to extract high-quality DNA from mushrooms collected in the wild, even in remote locations without refrigeration. The technique involves preserving fresh samples in alcohol and then carefully purifying the DNA through multiple steps. This method successfully produced DNA suitable for reading the complete genetic code of 23 different fungal species, particularly those that cannot be grown in laboratories.

Aspergillus in Italian Pistachios: Characterization and Detection of Major Aflatoxigenic Species With a Loop-Mediated Isothermal Amplification Assay

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Researchers studied pistachio nuts from Italy and found dangerous mold species that produce aflatoxins, harmful toxins that can cause serious health problems. They developed a quick and reliable test using molecular biology techniques to detect these molds in pistachios, even at very low levels of contamination. The test uses specially treated dried primers that remain stable for over a month, making it practical for food safety monitoring in warehouses and markets around the world.

An Optimized In-House Protocol for Cryptococcus neoformans DNA Extraction from Whole Blood: Comparison of Lysis Buffer and Ox-Bile Methods

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Researchers developed a simple, low-cost method to extract DNA from Cryptococcus neoformans fungal cells found in blood samples. The new method uses a homemade salt buffer solution instead of expensive commercial kits, making it accessible to laboratories in developing countries. Testing showed this method works better than an alternative ox-bile method, detecting very small numbers of fungal cells. This breakthrough could help doctors more quickly diagnose a serious fungal infection called cryptococcal meningitis in resource-limited settings.

Optimizing a modified cetyltrimethylammonium bromide protocol for fungal DNA extraction: Insights from multilocus gene amplification

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This research improves how scientists extract DNA from fungi found in dried fruits and other sources. The modified CTAB method is faster, cheaper, and produces higher quality DNA than commercial kits, without requiring special equipment like liquid nitrogen. The extracted DNA works well for identifying fungal species and detecting fungal diseases in fish, plants, and humans, making it valuable for both research and medical diagnostics.

PCR enables rapid detection of dermatophytes in practice

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This study shows that a new rapid DNA-based test (PCR) is much faster and more effective than traditional methods for diagnosing fungal skin, hair, and nail infections. While traditional culture methods took about 19 days to get results, the new PCR test gives results in just 16 hours. The PCR test detected more infections and is now the preferred diagnostic method in Northern Finland, helping doctors treat patients more quickly and avoid unnecessary antifungal medications.

Design of a melting curve analysis (MCA) based on multiplex real-time PCR for detection of Aspergillus terreus and Aspergillus fumigatus in cereals and oilseeds samples

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This study developed a fast molecular test using real-time PCR to detect harmful Aspergillus fungi in grains and seeds. Instead of waiting 3-5 days for traditional culture methods, this new test can identify the fungi in just hours by detecting specific DNA patterns. The test was tested on 140 samples of cereals and oilseeds and proved more accurate than traditional methods, making it useful for food safety in markets and processing plants.

Improved Extraction Methods to Isolate High Molecular Weight DNA From Magnaporthaceae and Other Grass Root Fungi for Long-Read Whole Genome Sequencing

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Scientists have developed improved methods to extract high-quality DNA from pathogenic fungi, which is essential for sequencing and understanding how these fungi cause plant diseases. Two different extraction techniques were refined and tested on Magnaporthaceae fungi: one that works with small amounts of fungal material, and another that produces longer DNA strands when more material is available. The key to success is harvesting the fungi before they accumulate dark pigments that interfere with DNA extraction. These protocols will help researchers create better genome maps of disease-causing fungi, leading to improved strategies for crop protection.

Clinical and Molecular Characterization of Feline Sporotrichosis in the Brazilian Amazon: PCR-Based Identification of Sporothrix brasiliensis

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This research studied a fungal disease called sporotrichosis that affects cats in the Brazilian Amazon and can spread to humans. Most infected cats were young males that roamed freely outdoors and had skin lesions on their faces and paws. Researchers tested different laboratory methods to identify the fungus and found that a specific technique extracted DNA best. They confirmed that Sporothrix brasiliensis was the cause and tested how well common antifungal medications work against it, finding that some drugs work better than others.

Optimizing a modified cetyltrimethylammonium bromide protocol for fungal DNA extraction: Insights from multilocus gene amplification

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Researchers developed an improved method for extracting fungal DNA that is faster, cheaper, and safer than current commercial kits. The new protocol works by using a special chemical solution and simple crushing tools instead of expensive equipment like liquid nitrogen or bead beaters. They tested it on 40 different fungal species found in dry fruits and successfully identified them all using genetic markers, showing the method could help diagnose fungal diseases in plants, animals, and humans.

Methodology for Extracting High-Molecular-Weight DNA from Field Collections of Macrofungi

mycolabadmin

Scientists developed a practical method to extract high-quality DNA from mushrooms found in nature, which is essential for understanding fungal genomes. The technique works without needing freezers or ice by preserving tissue in alcohol at room temperature. The method successfully extracted usable DNA from 33 different mushroom species, including rare species that cannot be grown in laboratories, enabling researchers to sequence and study their complete genomes.

Research Keyword: DNA extraction