Research Keyword: De novo assembly

Draft genome sequence data of Fusarium verticillioides strain REC01, a phytopathogen isolated from a Peruvian maize

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Researchers sequenced the genome of a fungus that causes rot disease in corn plants, specifically from samples found in Peru. The fungus produces toxins that harm both human and animal health and reduces crop yields. By analyzing the fungus’s genetic code and comparing it with other strains, scientists can better understand how it causes disease and develop better strategies to protect corn crops.

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Draft whole genome sequence of Alternaria alternata strain P02PL2, an endophytic fungal species isolated from Sclerocarya birrea

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Scientists sequenced the complete genetic blueprint of a beneficial fungus called Alternaria alternata that lives inside African marula tree leaves. This fungus produces many different bioactive compounds with potential medical applications. The genetic information is now publicly available for researchers to study how this fungus makes these useful compounds and develop new treatments.

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Draft genome sequence of Neofusicoccum caryigenum associated with pecan leaf dieback

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Scientists have sequenced the genetic blueprint of a fungus causing pecan leaf dieback disease, an emerging problem in southeastern U.S. pecan orchards. The fungus, called Neofusicoccum caryigenum, causes pecan trees to lose their leaves and produce fewer nuts. This first-ever genetic map of the pathogen will help researchers understand how it works and develop better ways to manage the disease.

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Genome Sequencing of Hericium coralloides by a Combination of PacBio RS II and Next-Generation Sequencing Platforms

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Scientists successfully sequenced the complete genome of Hericium coralloides, a medicinal mushroom used in traditional Chinese medicine for treating heart disease, cancer, and stomach problems. Using advanced sequencing technology combining long-read and short-read methods, they assembled the 55 million base pair genome containing over 11,700 genes. This genetic blueprint reveals the mushroom contains genes for producing beneficial enzymes and compounds with therapeutic potential. This milestone opens the door for future research to develop new medicines based on this mushroom’s natural bioactive properties.

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A high-quality genome assembly of Lactarius hatsudake strain JH5

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Scientists have completed a detailed genetic blueprint of the red milk mushroom (Lactarius hatsudake), an edible and medicinal fungus that grows in pine forests. This mushroom is nutritious and has been shown to help with diabetes, boost immunity, and fight harmful bacteria. The new genetic map is much more complete and detailed than previous versions, which will help farmers grow these valuable mushrooms more reliably and sustainably, and could lead to developing better varieties.

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