Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
- Author: mycolabadmin
- 2021-09-28
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Summary
This research examined how shiitake mushrooms have adapted to different environments across China through changes in their DNA. The study revealed that different groups of shiitake mushrooms have evolved distinct genetic traits to help them survive in different temperature conditions and locations. This has important implications for mushroom cultivation and breeding.
Impacts on everyday life:
– Helps mushroom farmers select better strains for their local climate conditions
– Enables development of new shiitake varieties with improved growing characteristics
– Provides insights for optimizing commercial mushroom production methods
– Contributes to understanding how food crops adapt to different environments
– Could lead to more resilient mushroom strains for changing climate conditions
Background
Mushroom-forming fungi comprise diverse species that develop complex multicellular structures. In cultivated species, both ecological adaptation and artificial selection have driven genome evolution. However, little is known about the connections among genotype, phenotype and adaptation in mushroom-forming fungi.
Objective
This study aimed to (1) uncover the population structure and demographic history of Lentinula edodes, (2) dissect the genetic basis of adaptive evolution in L. edodes, and (3) determine if genes related to fruiting body development are involved in adaptive evolution.
Results
Three distinct subgroups of L. edodes were detected via single nucleotide polymorphisms, showing robust phenotypic and temperature response differentiation and correlation with geographical distribution. Demographic history inference suggests the subgroups diverged 36,871 generations ago. L. edodes cultivars in China may have originated from the vicinity of Northeast China. A total of 942 genes were found to be related to genetic divergence by genomic scan, and 719 genes were identified as candidates underlying fruiting body-related traits by GWAS. Integrating results, 80 genes were detected to be related to phenotypic differentiation. A total of 364 genes related to fruiting body development were involved in genetic divergence and phenotypic differentiation.
Conclusion
Adaptation to the local environment, especially temperature, triggered genetic divergence and phenotypic differentiation of L. edodes. A general model for genetic divergence and phenotypic differentiation during adaptive evolution in L. edodes, which involves signal perception and transduction, transcriptional regulation, and fruiting body morphogenesis, was integrated.
- Published in:Journal of Advanced Research,
- Study Type:Genomic Analysis,
- Source: 10.1016/j.jare.2021.09.008